Variant report

Variant	rs920172
Chromosome Location	chr10:44782724-44782725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1657344	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1657345	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs1657346	0.90[AFR][1000 genomes]
rs800314	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv508579	chr10:44709770-44799256	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44777200-44782800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:44777200-44782800	Weak transcription	Lung	lung
3	chr10:44777400-44788200	Weak transcription	Right Atrium	heart
4	chr10:44779400-44787600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:44779400-44787800	Weak transcription	Brain Germinal Matrix	brain
6	chr10:44780000-44783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:44780000-44788000	Weak transcription	Pancreas	Pancrea
8	chr10:44780400-44782800	Weak transcription	Left Ventricle	heart
9	chr10:44780400-44787600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:44780600-44784400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44781200-44783200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:44781600-44783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr10:44782000-44783200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr10:44782000-44783200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:44782000-44783600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr10:44782000-44783800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:44782000-44785200	Enhancers	Fetal Stomach	stomach
18	chr10:44782000-44787800	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr10:44782200-44783600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr10:44782200-44783800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr10:44782600-44783000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr10:44782600-44783200	Enhancers	HepG2	liver
23	chr10:44782600-44783600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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