Variant report

Variant	rs2625552
Chromosome Location	chr3:79959453-79959454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11711664	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12633148	0.81[EUR][1000 genomes]
rs12633619	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1354211	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1354212	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1384764	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1502294	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1553338	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1910145	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2036421	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2374748	0.80[ASN][1000 genomes]
rs2374749	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2374750	0.81[ASN][1000 genomes]
rs2374751	0.81[ASN][1000 genomes]
rs2374752	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2625548	0.82[ASN][1000 genomes]
rs2625549	0.81[ASN][1000 genomes]
rs2888914	0.81[ASN][1000 genomes]
rs4563372	0.81[ASN][1000 genomes]
rs4856212	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4856381	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6796632	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9309842	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9808929	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9809811	0.81[ASN][1000 genomes]
rs9814841	0.81[ASN][1000 genomes]
rs9814940	0.81[ASN][1000 genomes]
rs9819252	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9840665	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9841163	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9852463	0.81[ASN][1000 genomes]
rs9852477	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9879099	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv3889	chr3:79929718-79974707	Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79955600-79959600	Weak transcription	Ovary	ovary

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