Variant report

Variant	rs2374752
Chromosome Location	chr3:79987748-79987749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:79985588..79988269-chr3:79997438..79999054,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11127670	0.82[ASN][1000 genomes]
rs11711664	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12633148	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12633619	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1354211	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1354212	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1384764	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1502294	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1553338	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1910145	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2036421	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2374749	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2625552	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28715829	0.84[AMR][1000 genomes]
rs4856212	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4856381	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6789707	0.82[ASN][1000 genomes]
rs6794277	0.82[ASN][1000 genomes]
rs6796632	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7640469	0.80[AMR][1000 genomes]
rs922918	0.81[ASN][1000 genomes]
rs9309842	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9808929	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9817540	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9817714	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9819252	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9819327	0.82[ASN][1000 genomes]
rs9825862	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9827677	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9832927	0.80[AMR][1000 genomes]
rs9840665	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9841163	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9844881	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9852477	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9860215	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79986200-79987800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:79986400-79988000	Enhancers	Hela-S3	cervix
3	chr3:79986800-79987800	Enhancers	Fetal Intestine Large	intestine
4	chr3:79987200-79987800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:79987600-79988800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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