Variant report

Variant	rs6789707
Chromosome Location	chr3:79977104-79977105
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11127669	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11127670	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127671	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12054051	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13079613	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1384761	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1384762	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483440	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483442	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1483448	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1875566	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1905342	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1905343	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2374748	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2374750	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2374751	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2374752	0.82[ASN][1000 genomes]
rs2625548	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2625549	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2888914	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35747596	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35760469	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36071399	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4496441	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4563372	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4856441	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6548667	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6548668	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6548669	0.85[ASN][1000 genomes]
rs6548670	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67022223	0.82[ASN][1000 genomes]
rs6767014	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6771640	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6781474	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6794277	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7609707	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs922918	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9809673	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809811	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9814841	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9814940	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9818288	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9819327	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9829120	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9829421	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9852463	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9879099	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs988178	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79976600-79979400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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