Variant report

Variant	rs13079613
Chromosome Location	chr3:79925045-79925046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11127669	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11127670	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12054051	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1483448	0.81[AMR][1000 genomes]
rs1875566	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1905342	0.90[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs1905343	0.90[CEU][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes]
rs2374748	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2374750	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2374751	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2625548	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2625549	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2888914	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35747596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35760469	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4496441	0.85[EUR][1000 genomes]
rs4563372	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6548667	0.81[AMR][1000 genomes]
rs6548668	0.81[AMR][1000 genomes]
rs67022223	0.80[ASN][1000 genomes]
rs6789707	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6794277	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7609707	0.81[AMR][1000 genomes]
rs922918	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9809673	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9809811	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9814841	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9814940	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9818288	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9819327	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9829120	0.81[AMR][1000 genomes]
rs9829421	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9852463	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9879099	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999796	chr3:79762461-79938163	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv877029	chr3:79824232-79947253	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79917400-79927400	Weak transcription	Aorta	Aorta
2	chr3:79922800-79928400	Weak transcription	HUVEC	blood vessel
3	chr3:79923000-79927600	Weak transcription	Hela-S3	cervix
4	chr3:79925000-79933400	Weak transcription	Fetal Heart	heart

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