Variant report

Variant	rs9818288
Chromosome Location	chr3:80019649-80019650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11127669	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11127670	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11127671	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12054051	0.81[EUR][1000 genomes]
rs13079613	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1384761	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1384762	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1483440	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1483442	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1483448	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1875566	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1905342	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1905343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2374748	0.85[ASN][1000 genomes]
rs2374750	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2374751	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2625548	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2625549	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2888914	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35747596	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36071399	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4496441	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4563372	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4856441	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6548667	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6548668	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6548669	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6548670	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6767014	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6771640	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6781474	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6789707	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6794277	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7609707	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922918	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9809673	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9809811	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9814841	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9814940	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9819327	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9829120	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9829421	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9852463	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9879099	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs988178	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428088	chr3:79934080-80112721	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv590740	chr3:79999534-80575042	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv997786	chr3:80008898-80489031	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv536598	chr3:80008898-80489031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv877030	chr3:80013063-80444843	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:80019400-80019800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links