Variant report

Variant	rs1875566
Chromosome Location	chr3:79917528-79917529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:79917063..79919514-chr3:79920813..79923055,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11127669	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11127670	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12054051	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13079613	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1905342	0.86[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs1905343	0.85[CEU][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs2374748	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2374750	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2374751	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2625548	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2625549	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2888914	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35747596	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35760469	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4496441	0.85[EUR][1000 genomes]
rs4563372	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6789707	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6794277	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs922918	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9809673	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9809811	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9814841	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9814940	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9818288	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9819327	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9829421	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9852463	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9879099	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009391	chr3:79604443-80035898	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv877026	chr3:79720785-79918274	Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv999796	chr3:79762461-79938163	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv877029	chr3:79824232-79947253	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv834748	chr3:79828668-79985688	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79914000-79918000	Weak transcription	Fetal Lung	lung
2	chr3:79917400-79927400	Weak transcription	Aorta	Aorta

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