Variant report
| Variant | rs2629718 |
|---|---|
| Chromosome Location | chr4:20002817-20002818 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1026973 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1032135 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12509871 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12643020 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1385648 | 0.89[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2200423 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2256261 | 0.91[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2629713 | 0.94[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2629714 | 0.94[EUR][1000 genomes] |
| rs2708981 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2708988 | 0.92[EUR][1000 genomes] |
| rs28693868 | 0.82[ASN][1000 genomes] |
| rs2952723 | 0.86[EUR][1000 genomes] |
| rs36122805 | 0.81[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4575988 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4618309 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs55871105 | 0.96[EUR][1000 genomes] |
| rs56207856 | 0.91[ASN][1000 genomes] |
| rs56287156 | 0.91[ASN][1000 genomes] |
| rs73803907 | 0.81[EUR][1000 genomes] |
| rs923117 | 0.92[AFR][1000 genomes];0.92[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529290 | chr4:19658583-20173839 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv593790 | chr4:19740879-20142039 | Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2752044 | chr4:19788263-20126804 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1005430 | chr4:19932874-20013705 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv1004033 | chr4:19986986-20043516 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:20001600-20006800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr4:20002000-20004000 | Weak transcription | Fetal Lung | lung |
