Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1026973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1032135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12509871	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12643020	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1385648	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2200423	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2256261	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2629713	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2629714	0.94[EUR][1000 genomes]
rs2629718	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2708988	0.92[EUR][1000 genomes]
rs2952723	0.86[EUR][1000 genomes]
rs36122805	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs4575988	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4618309	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55871105	0.96[EUR][1000 genomes]
rs56207856	0.88[ASN][1000 genomes]
rs56287156	0.88[ASN][1000 genomes]
rs73803907	0.81[EUR][1000 genomes]
rs923117	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv593790	chr4:19740879-20142039	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2752044	chr4:19788263-20126804	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005430	chr4:19932874-20013705	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
5	nsv1004033	chr4:19986986-20043516	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20005600-20018400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:20006800-20007400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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