Variant report

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr15:74585251-74585970	SK-N-SH	brain:	n/a	n/a
2	GATA2	chr15:74585324-74586088	SH-SY5Y	brain:	n/a	n/a
3	POLR2A	chr15:74585259-74585985	SK-N-SH	brain:	n/a	n/a
4	REST	chr15:74585301-74585723	SK-N-SH	brain:	n/a	n/a
5	YY1	chr15:74585269-74585730	SK-N-SH_RA	brain:	n/a	n/a
6	EP300	chr15:74585189-74586034	SK-N-SH_RA	brain:	n/a	n/a
7	RAD21	chr15:74585212-74585818	SK-N-SH_RA	brain:	n/a	chr15:74585670-74585683
8	REST	chr15:74585337-74585732	PFSK-1	brain:	n/a	n/a
9	NFIC	chr15:74585385-74585867	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr15:74585276-74585528	SK-N-SH	brain:	n/a	n/a
11	REST	chr15:74585325-74585634	HL-60	blood:	n/a	n/a
12	TCF12	chr15:74585216-74585937	SK-N-SH	brain:	n/a	n/a
13	EP300	chr15:74581942-74586920	SK-N-SH	brain:	n/a	n/a
14	EP300	chr15:74585253-74585968	SK-N-SH	brain:	n/a	n/a
15	TEAD4	chr15:74585382-74585831	SK-N-SH	brain:	n/a	n/a
16	TCF12	chr15:74585186-74586086	SK-N-SH	brain:	n/a	n/a
17	GATA3	chr15:74585307-74585789	SK-N-SH	brain:	n/a	n/a
18	EP300	chr15:74585225-74586033	SK-N-SH_RA	brain:	n/a	n/a
19	GATA3	chr15:74585366-74585778	SH-SY5Y	brain:	n/a	n/a
20	TEAD4	chr15:74585407-74585930	SK-N-SH	brain:	n/a	n/a
21	RAD21	chr15:74585310-74585760	SK-N-SH_RA	brain:	n/a	chr15:74585670-74585683

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74583306..74585518-chr15:74588891..74592358,3	MCF-7	breast:
2	chr15:74470292..74472068-chr15:74583811..74585513,2	MCF-7	breast:
3	chr15:74585453..74587041-chr15:74587963..74590487,2	MCF-7	breast:
4	chr15:74585072..74587120-chr15:74590756..74593665,2	MCF-7	breast:
5	chr15:74516266..74518836-chr15:74583231..74585495,2	MCF-7	breast:
6	chr15:74556821..74558420-chr15:74583588..74586004,2	MCF-7	breast:

No data

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10468059	1.00[AMR][1000 genomes]
rs191588	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs351166	1.00[EUR][1000 genomes]
rs351168	1.00[EUR][1000 genomes]
rs351198	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs351200	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs351212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4987132	1.00[AMR][1000 genomes]
rs503893	1.00[EUR][1000 genomes]
rs56713550	1.00[EUR][1000 genomes]
rs7162280	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1035367	chr15:74554972-74586538	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74584200-74607400	Weak transcription	Right Atrium	heart
2	chr15:74584400-74588000	Enhancers	Brain Germinal Matrix	brain
3	chr15:74584400-74592000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:74584400-74592000	Weak transcription	Spleen	Spleen
5	chr15:74584800-74586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr15:74585200-74585600	Weak transcription	Fetal Brain Female	brain

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