Variant report

Variant	rs351200
Chromosome Location	chr15:74580554-74580555
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10468059	1.00[AMR][1000 genomes]
rs191588	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2629730	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs351166	1.00[EUR][1000 genomes]
rs351168	1.00[EUR][1000 genomes]
rs351198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs351212	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4987132	1.00[AMR][1000 genomes]
rs503893	1.00[EUR][1000 genomes]
rs56713550	1.00[EUR][1000 genomes]
rs7162280	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833054	chr15:74457643-74625283	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1035367	chr15:74554972-74586538	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv428641	chr15:74555113-74724630	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74568000-74583800	Weak transcription	Right Atrium	heart
2	chr15:74576400-74583400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:74577000-74582800	Weak transcription	Fetal Brain Male	brain
4	chr15:74577200-74583400	Weak transcription	Fetal Brain Female	brain
5	chr15:74579200-74582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74579200-74583600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:74579800-74583200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:74580200-74581000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr15:74580400-74580800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr15:74580400-74581000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr15:74580400-74581600	Enhancers	Brain Germinal Matrix	brain
12	chr15:74580400-74582400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr15:74580400-74582800	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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