Variant report

Variant	rs263134
Chromosome Location	chr6:142954806-142954807
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs166399	0.82[EUR][1000 genomes]
rs185523	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs187809	0.81[EUR][1000 genomes]
rs263102	0.81[EUR][1000 genomes]
rs263125	0.83[EUR][1000 genomes]
rs263127	0.83[EUR][1000 genomes]
rs263132	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs263133	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs263135	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263137	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs263138	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs263139	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263140	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263142	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263143	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263144	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263145	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263146	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs263147	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs263148	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263149	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263151	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs263152	0.86[EUR][1000 genomes]
rs28514730	0.81[ASN][1000 genomes]
rs35670034	0.98[ASN][1000 genomes]
rs6916595	1.00[ASN][1000 genomes]
rs6917687	1.00[ASN][1000 genomes]
rs6939573	1.00[ASN][1000 genomes]
rs7759020	1.00[ASN][1000 genomes]
rs9496425	1.00[ASN][1000 genomes]
rs9496428	1.00[ASN][1000 genomes]
rs9496429	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142946800-142956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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