Variant report

Variant	rs6939573
Chromosome Location	chr6:142956046-142956047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13217677	0.80[EUR][1000 genomes]
rs1417359	0.85[EUR][1000 genomes]
rs2225700	0.85[EUR][1000 genomes]
rs263133	0.95[ASN][1000 genomes]
rs263134	1.00[ASN][1000 genomes]
rs263135	1.00[ASN][1000 genomes]
rs28514730	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35670034	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35781078	0.88[EUR][1000 genomes]
rs56077882	0.82[EUR][1000 genomes]
rs67446783	0.88[EUR][1000 genomes]
rs6916595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917687	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921853	0.88[EUR][1000 genomes]
rs7739444	0.84[EUR][1000 genomes]
rs7759020	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767308	0.85[EUR][1000 genomes]
rs844443	0.85[EUR][1000 genomes]
rs9373355	0.87[EUR][1000 genomes]
rs9386003	0.85[EUR][1000 genomes]
rs9390009	0.82[EUR][1000 genomes]
rs9390011	0.85[EUR][1000 genomes]
rs9403400	0.85[EUR][1000 genomes]
rs9484661	0.83[EUR][1000 genomes]
rs9496423	0.86[EUR][1000 genomes]
rs9496425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496427	0.88[EUR][1000 genomes]
rs9496428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496429	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496432	0.82[EUR][1000 genomes]
rs9496434	0.82[EUR][1000 genomes]
rs9496439	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142955800-142956800	Enhancers	NH-A	brain
2	chr6:142956000-142956600	Enhancers	A549	lung
3	chr6:142956000-142956800	Enhancers	NHEK	skin
4	chr6:142956000-142956800	Enhancers	Osteobl	bone
5	chr6:142956000-142957000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:142956000-142957600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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