Variant report

Variant	rs9496423
Chromosome Location	chr6:142948379-142948380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1070576	0.86[EUR][1000 genomes]
rs1070577	0.86[EUR][1000 genomes]
rs1098067	0.85[EUR][1000 genomes]
rs13217677	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1417359	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs263152	1.00[ASN][1000 genomes]
rs2664050	0.86[EUR][1000 genomes]
rs35670034	0.86[EUR][1000 genomes]
rs35781078	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56077882	0.89[EUR][1000 genomes]
rs67446783	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906209	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6916595	0.86[EUR][1000 genomes]
rs6917687	0.85[EUR][1000 genomes]
rs6921853	0.97[EUR][1000 genomes]
rs6939573	0.86[EUR][1000 genomes]
rs702294	0.86[EUR][1000 genomes]
rs702295	0.86[EUR][1000 genomes]
rs702296	0.86[EUR][1000 genomes]
rs702298	0.86[EUR][1000 genomes]
rs7759020	0.86[EUR][1000 genomes]
rs844443	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386003	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9390007	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9390009	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9390011	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403400	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9496420	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9496425	0.86[EUR][1000 genomes]
rs9496427	0.97[EUR][1000 genomes]
rs9496428	0.86[EUR][1000 genomes]
rs9496429	0.86[EUR][1000 genomes]
rs9496432	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs9496434	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142946800-142956000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142947000-142949200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:142947600-142948600	Enhancers	NHEK	skin
4	chr6:142948000-142948400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr6:142948000-142949200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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