Variant report

Variant	rs702294
Chromosome Location	chr6:142885951-142885952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:142885913..142888379-chr6:142890685..142893143,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1070576	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1070577	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1098067	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1098071	0.91[ASN][1000 genomes]
rs13217677	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1417359	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs171913	0.89[ASN][1000 genomes]
rs171914	0.89[ASN][1000 genomes]
rs263114	0.91[ASN][1000 genomes]
rs263120	0.90[ASN][1000 genomes]
rs263121	0.90[ASN][1000 genomes]
rs263154	0.85[ASN][1000 genomes]
rs263166	0.88[ASN][1000 genomes]
rs263175	0.88[ASN][1000 genomes]
rs2664050	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35781078	0.87[EUR][1000 genomes]
rs56077882	0.82[EUR][1000 genomes]
rs67446783	0.87[EUR][1000 genomes]
rs6906209	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6921853	0.87[EUR][1000 genomes]
rs702289	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs702290	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs702291	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs702292	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs702293	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs702295	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs702296	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs702298	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs844443	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs863432	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9386003	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9390007	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390009	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390011	0.91[EUR][1000 genomes]
rs9403400	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9496420	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496423	0.86[EUR][1000 genomes]
rs9496427	0.87[EUR][1000 genomes]
rs9496432	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap];0.82[EUR][1000 genomes]
rs9496434	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142873600-142888800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:142882600-142889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:142883400-142890400	Weak transcription	Stomach Mucosa	stomach
4	chr6:142883600-142889400	Weak transcription	Fetal Thymus	thymus
5	chr6:142884000-142887600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:142884000-142888000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:142884200-142887600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:142884200-142887600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr6:142884200-142887800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr6:142884200-142887800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr6:142884200-142888200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:142884200-142890200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:142884400-142887600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:142885000-142887400	Weak transcription	Primary T cells from cord blood	blood
15	chr6:142885200-142891000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:142885600-142886800	Enhancers	Primary T helper cells PMA-I stimulated	--

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