Variant report

Variant	rs13217677
Chromosome Location	chr6:142921498-142921499
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1070576	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1070577	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1098067	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1098071	0.85[ASN][1000 genomes]
rs1417359	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs171913	0.83[ASN][1000 genomes]
rs171914	0.82[ASN][1000 genomes]
rs263114	0.85[ASN][1000 genomes]
rs263120	0.90[ASN][1000 genomes]
rs263121	0.90[ASN][1000 genomes]
rs263154	0.95[ASN][1000 genomes]
rs263166	0.88[ASN][1000 genomes]
rs263175	0.81[ASN][1000 genomes]
rs2664050	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35670034	0.80[EUR][1000 genomes]
rs35781078	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56077882	0.86[EUR][1000 genomes]
rs67446783	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6906209	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6916595	0.80[EUR][1000 genomes]
rs6917687	0.81[EUR][1000 genomes]
rs6921853	0.91[EUR][1000 genomes]
rs6939573	0.80[EUR][1000 genomes]
rs702289	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs702290	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs702291	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs702292	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs702293	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs702294	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702295	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702296	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702298	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7759020	0.80[EUR][1000 genomes]
rs844443	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs863432	0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9321872	0.86[AFR][1000 genomes]
rs9386003	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9390007	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9390009	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9390011	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9403400	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9496420	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9496421	0.81[AFR][1000 genomes]
rs9496423	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9496425	0.80[EUR][1000 genomes]
rs9496427	0.91[EUR][1000 genomes]
rs9496428	0.80[EUR][1000 genomes]
rs9496429	0.80[EUR][1000 genomes]
rs9496432	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs9496434	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3334253	chr6:142920209-142922307	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142919400-142926800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:142919800-142927000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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