Variant report

Variant	rs263121
Chromosome Location	chr6:142894300-142894301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1070576	0.99[ASN][1000 genomes]
rs1070577	0.99[ASN][1000 genomes]
rs1098071	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13217677	0.90[ASN][1000 genomes]
rs166401	0.84[EUR][1000 genomes]
rs171913	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs171914	0.89[ASN][1000 genomes]
rs183799	0.84[EUR][1000 genomes]
rs187810	0.89[EUR][1000 genomes]
rs190522	0.84[EUR][1000 genomes]
rs190523	0.84[EUR][1000 genomes]
rs196353	0.86[EUR][1000 genomes]
rs263103	0.85[EUR][1000 genomes]
rs263104	0.85[EUR][1000 genomes]
rs263105	0.85[EUR][1000 genomes]
rs263107	0.85[EUR][1000 genomes]
rs263113	0.88[EUR][1000 genomes]
rs263114	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs263115	0.87[EUR][1000 genomes]
rs263116	0.89[EUR][1000 genomes]
rs263119	0.90[EUR][1000 genomes]
rs263120	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263122	0.88[EUR][1000 genomes]
rs263154	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs263155	0.87[EUR][1000 genomes]
rs263156	0.87[EUR][1000 genomes]
rs263165	0.87[EUR][1000 genomes]
rs263166	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs263167	0.85[EUR][1000 genomes]
rs263168	0.84[EUR][1000 genomes]
rs263171	0.84[EUR][1000 genomes]
rs263172	0.82[EUR][1000 genomes]
rs263174	0.84[EUR][1000 genomes]
rs263175	0.88[ASN][1000 genomes]
rs263176	0.83[EUR][1000 genomes]
rs2664050	0.99[ASN][1000 genomes]
rs605790	0.87[EUR][1000 genomes]
rs6906209	0.92[ASN][1000 genomes]
rs702289	0.88[ASN][1000 genomes]
rs702290	0.88[ASN][1000 genomes]
rs702291	0.88[ASN][1000 genomes]
rs702292	0.92[ASN][1000 genomes]
rs702293	0.92[ASN][1000 genomes]
rs702294	0.90[ASN][1000 genomes]
rs702295	0.95[ASN][1000 genomes]
rs702296	0.95[ASN][1000 genomes]
rs702298	0.99[ASN][1000 genomes]
rs839554	0.87[EUR][1000 genomes]
rs839556	0.83[EUR][1000 genomes]
rs863432	0.88[ASN][1000 genomes]
rs9390007	0.89[ASN][1000 genomes]
rs9390009	0.91[ASN][1000 genomes]
rs9496420	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1023426	chr6:142813845-142940262	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520479	chr6:142869099-142908146	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142891600-142895200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:142892200-142895200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:142893200-142895000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:142893800-142895200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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