Variant report
Variant | rs7739444 |
---|---|
Chromosome Location | chr6:142985541-142985542 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12205601 | 0.86[EUR][1000 genomes] |
rs2175165 | 0.98[ASN][1000 genomes] |
rs2225700 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs28514730 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2876520 | 0.94[ASN][1000 genomes] |
rs35670034 | 0.84[EUR][1000 genomes] |
rs6916595 | 0.84[EUR][1000 genomes] |
rs6917687 | 0.85[EUR][1000 genomes] |
rs6939573 | 0.84[EUR][1000 genomes] |
rs7759020 | 0.84[EUR][1000 genomes] |
rs7767308 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs9484661 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs9496425 | 0.84[EUR][1000 genomes] |
rs9496428 | 0.84[EUR][1000 genomes] |
rs9496429 | 0.84[EUR][1000 genomes] |
rs9496432 | 0.91[GIH][hapmap] |
rs9496439 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949088 | chr6:142561402-143128849 | Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv830827 | chr6:142840734-143015005 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv830828 | chr6:142970134-143116517 | Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:142984200-142988200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |