Variant report

Variant	rs2631412
Chromosome Location	chr11:24782437-24782438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1471862	0.81[ASN][1000 genomes]
rs1586395	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1586396	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2631394	0.81[ASN][1000 genomes]
rs2631395	0.81[ASN][1000 genomes]
rs2631396	0.81[ASN][1000 genomes]
rs2631406	0.83[ASN][1000 genomes]
rs2631409	0.87[ASN][1000 genomes]
rs2716441	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2716529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2716530	0.97[ASN][1000 genomes]
rs2716539	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052730	chr11:24695821-25272497	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1053055	chr11:24700012-25293551	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv897094	chr11:24761831-24793160	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv1044583	chr11:24772936-24831557	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv553822	chr11:24774037-24786653	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	nsv897095	chr11:24774864-24793160	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv553823	chr11:24778111-24788677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv897096	chr11:24778111-24793160	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv523280	chr11:24778459-24786653	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv553824	chr11:24778459-24788677	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	nsv897097	chr11:24778459-24793715	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv897098	chr11:24778459-24814076	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv467756	chr11:24778961-24793160	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	nsv553825	chr11:24778961-24793160	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv469946	chr11:24778961-24795275	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv467757	chr11:24778961-24803061	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv553826	chr11:24778961-24803061	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24782200-24783000	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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