Variant report

Variant	rs2631611
Chromosome Location	chr7:129454817-129454818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10215972	0.82[JPT][hapmap]
rs1464973	0.96[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs1725077	0.96[CEU][hapmap];0.82[JPT][hapmap]
rs2631602	0.81[CEU][hapmap]
rs2693724	0.85[EUR][1000 genomes]
rs2708637	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs2727455	1.00[ASN][1000 genomes]
rs2727464	1.00[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2727477	0.80[EUR][1000 genomes]
rs2727487	0.92[CEU][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs2727488	0.85[EUR][1000 genomes]
rs2727499	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2727500	1.00[CEU][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2727502	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3817530	0.82[JPT][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2631611	KCP	cis	cerebellum	SCAN
rs2631611	SMO	cis	cerebellum	SCAN
rs2631611	FSCN3	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129445200-129464600	Weak transcription	Right Atrium	heart
2	chr7:129445600-129464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129445600-129464600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:129453200-129458000	Weak transcription	HSMMtube	muscle
5	chr7:129453800-129460000	Weak transcription	Aorta	Aorta
6	chr7:129454200-129455000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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