Variant report

Variant	rs2727502
Chromosome Location	chr7:129462752-129462753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129303349..129305568-chr7:129461167..129463400,2	K562	blood:
2	chr7:129454177..129456052-chr7:129461153..129463544,2	K562	blood:
3	chr7:129415990..129422927-chr7:129459994..129470946,26	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10215972	0.82[JPT][hapmap]
rs1464973	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1725077	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs2631602	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs2631611	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2693724	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2708637	0.96[CEU][hapmap];0.85[CHB][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2727455	0.86[ASN][1000 genomes]
rs2727464	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2727477	0.80[EUR][1000 genomes]
rs2727487	0.92[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2727488	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2727499	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2727500	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3817530	0.82[JPT][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129445200-129464600	Weak transcription	Right Atrium	heart
2	chr7:129445600-129464200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129445600-129464600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:129456800-129464600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:129457000-129464400	Weak transcription	HMEC	breast
6	chr7:129457200-129464200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:129457400-129464800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:129457600-129464600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:129457600-129464600	Weak transcription	Fetal Brain Female	brain
10	chr7:129457800-129464600	Weak transcription	HSMM	muscle
11	chr7:129458000-129464400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:129458000-129464600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr7:129458200-129464200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr7:129458400-129464200	Weak transcription	Hela-S3	cervix
15	chr7:129459000-129464600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:129459400-129464600	Weak transcription	Pancreas	Pancrea
17	chr7:129460000-129464600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:129460400-129464600	Weak transcription	Fetal Brain Male	brain
19	chr7:129460400-129464600	Weak transcription	Fetal Stomach	stomach
20	chr7:129460600-129464600	Weak transcription	Right Ventricle	heart
21	chr7:129460800-129464600	Weak transcription	NH-A	brain
22	chr7:129461000-129464400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr7:129461000-129464600	Weak transcription	Ovary	ovary
24	chr7:129461000-129464600	Weak transcription	NHDF-Ad	bronchial
25	chr7:129461000-129464800	Weak transcription	Brain Substantia Nigra	brain
26	chr7:129461200-129464600	Weak transcription	NHEK	skin
27	chr7:129461400-129464400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:129461600-129464400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr7:129461800-129464600	Weak transcription	Aorta	Aorta
30	chr7:129462000-129464400	Weak transcription	K562	blood
31	chr7:129462000-129464600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:129462200-129464200	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:129462200-129464600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:129462200-129464600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr7:129462200-129464600	Weak transcription	Brain Angular Gyrus	brain
36	chr7:129462200-129464600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:129462200-129464600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:129462200-129465200	Weak transcription	Stomach Mucosa	stomach
39	chr7:129462200-129465200	Weak transcription	HSMMtube	muscle
40	chr7:129462400-129464600	Weak transcription	Fetal Heart	heart
41	chr7:129462400-129464600	Weak transcription	Fetal Muscle Trunk	muscle

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