Variant report

Variant	rs263621
Chromosome Location	chr9:17112169-17112170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs263560	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263563	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263622	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774616	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2815193	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2815199	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35530277	1.00[AMR][1000 genomes]
rs371497	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs378717	0.83[AMR][1000 genomes]
rs380045	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs386808	0.83[AMR][1000 genomes]
rs416421	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs440683	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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