Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:17116046..17116795-chr9:17462771..17463533,2	MCF-7	breast:
2	chr9:17116233..17116835-chr9:17462927..17463473,2	MCF-7	breast:
3	chr9:17116081..17117141-chr9:17402172..17402905,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1725362	0.89[YRI][hapmap]
rs196534	0.96[YRI][hapmap]
rs2632540	0.91[AFR][1000 genomes]
rs263560	0.85[AMR][1000 genomes]
rs263563	0.85[AMR][1000 genomes]
rs263607	0.96[YRI][hapmap]
rs263617	1.00[YRI][hapmap]
rs263618	1.00[YRI][hapmap]
rs263619	0.83[YRI][hapmap]
rs263621	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs263622	0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2815193	0.85[AMR][1000 genomes]
rs2815199	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35530277	0.85[AMR][1000 genomes]
rs366854	0.89[YRI][hapmap]
rs367508	0.89[YRI][hapmap]
rs367637	0.88[YRI][hapmap]
rs368656	0.89[YRI][hapmap]
rs370972	0.88[YRI][hapmap]
rs371497	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs377940	0.89[YRI][hapmap]
rs380045	0.85[AMR][1000 genomes]
rs381680	0.87[AMR][1000 genomes]
rs388148	0.89[YRI][hapmap]
rs388948	0.88[YRI][hapmap]
rs393468	0.89[YRI][hapmap]
rs397917	0.89[YRI][hapmap]
rs401111	0.89[YRI][hapmap]
rs402771	0.89[YRI][hapmap]
rs416421	0.85[AMR][1000 genomes]
rs416529	0.88[YRI][hapmap]
rs428996	0.89[YRI][hapmap]
rs429401	0.89[YRI][hapmap]
rs431705	0.88[YRI][hapmap]
rs440683	0.85[AMR][1000 genomes]
rs441045	0.88[YRI][hapmap]
rs441208	0.87[YRI][hapmap]
rs452070	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17116200-17116800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr9:17116200-17117000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr9:17116200-17117200	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr9:17116400-17117000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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