Variant report

Variant	rs263618
Chromosome Location	chr9:17111730-17111731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1016100	0.80[EUR][1000 genomes]
rs10810719	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10810724	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10962836	0.88[EUR][1000 genomes]
rs10962843	0.88[EUR][1000 genomes]
rs10962844	0.88[EUR][1000 genomes]
rs10962852	0.88[EUR][1000 genomes]
rs10962855	0.91[EUR][1000 genomes]
rs10962860	0.92[EUR][1000 genomes]
rs10962873	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10962875	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1725362	0.89[YRI][hapmap]
rs196534	0.96[YRI][hapmap]
rs2632540	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs263562	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs263565	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263566	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs263607	0.96[YRI][hapmap]
rs263617	1.00[YRI][hapmap]
rs263619	0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs263620	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263622	0.96[YRI][hapmap]
rs2774616	0.84[AFR][1000 genomes]
rs366854	0.89[YRI][hapmap]
rs367508	0.89[YRI][hapmap]
rs367637	0.88[YRI][hapmap]
rs368656	0.89[YRI][hapmap]
rs370972	0.88[YRI][hapmap]
rs377940	0.89[YRI][hapmap]
rs381883	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs388148	0.89[YRI][hapmap]
rs388948	0.89[YRI][hapmap]
rs393468	0.89[YRI][hapmap]
rs397917	0.89[YRI][hapmap]
rs398715	0.84[ASN][1000 genomes]
rs401111	0.89[YRI][hapmap]
rs402771	0.89[YRI][hapmap]
rs405039	0.93[ASN][1000 genomes]
rs416529	0.88[YRI][hapmap]
rs427659	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs428996	0.89[YRI][hapmap]
rs429401	0.89[YRI][hapmap]
rs431705	0.88[YRI][hapmap]
rs441045	0.88[YRI][hapmap]
rs441208	0.88[YRI][hapmap]
rs452070	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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