Variant report

Variant	rs196534
Chromosome Location	chr9:17098219-17098220
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1725362	0.92[YRI][hapmap]
rs263560	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263563	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263607	1.00[YRI][hapmap]
rs263617	0.96[YRI][hapmap]
rs263618	0.96[YRI][hapmap]
rs263619	0.82[YRI][hapmap]
rs263621	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263622	1.00[ASW][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2774616	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2815193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2815199	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35530277	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs366854	0.92[YRI][hapmap]
rs367508	0.92[YRI][hapmap]
rs367637	1.00[ASW][hapmap];0.97[LWK][hapmap];0.84[MKK][hapmap];0.92[YRI][hapmap]
rs368656	0.92[YRI][hapmap]
rs370972	0.93[ASW][hapmap];0.97[LWK][hapmap];0.92[YRI][hapmap]
rs371497	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs377940	0.92[YRI][hapmap]
rs378717	0.83[AMR][1000 genomes]
rs380045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs381912	0.81[AFR][1000 genomes]
rs386808	0.83[AMR][1000 genomes]
rs388148	0.92[YRI][hapmap]
rs388948	0.92[YRI][hapmap]
rs393468	0.92[YRI][hapmap]
rs397917	0.92[YRI][hapmap]
rs401111	0.92[YRI][hapmap]
rs402771	0.92[YRI][hapmap]
rs416421	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs416529	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs428996	0.92[YRI][hapmap]
rs429401	0.92[YRI][hapmap]
rs431705	0.93[ASW][hapmap];0.97[LWK][hapmap];0.92[YRI][hapmap]
rs440683	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs441045	0.93[ASW][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap]
rs441208	0.93[ASW][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.92[YRI][hapmap]
rs452070	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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