Variant report

Variant	rs393468
Chromosome Location	chr9:17051197-17051198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1725362	1.00[YRI][hapmap]
rs196534	0.92[YRI][hapmap]
rs263560	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263563	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263607	0.92[YRI][hapmap]
rs263617	0.89[YRI][hapmap]
rs263618	0.89[YRI][hapmap]
rs263621	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs263622	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs2774616	0.85[AMR][1000 genomes]
rs2815193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2815199	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35530277	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs366854	1.00[YRI][hapmap]
rs367508	1.00[YRI][hapmap]
rs367637	1.00[YRI][hapmap]
rs368656	1.00[YRI][hapmap]
rs370972	1.00[YRI][hapmap]
rs371497	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs377940	1.00[YRI][hapmap]
rs378717	0.83[AMR][1000 genomes]
rs380045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs381912	0.89[AFR][1000 genomes]
rs386808	0.83[AMR][1000 genomes]
rs388148	1.00[YRI][hapmap]
rs388948	1.00[YRI][hapmap]
rs397917	1.00[YRI][hapmap]
rs401111	1.00[YRI][hapmap]
rs402771	1.00[YRI][hapmap]
rs416421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs416529	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs428518	0.83[YRI][hapmap]
rs428996	1.00[YRI][hapmap]
rs429401	1.00[YRI][hapmap]
rs431705	1.00[YRI][hapmap]
rs440683	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs441045	1.00[YRI][hapmap]
rs441208	1.00[YRI][hapmap]
rs452070	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv613692	chr9:16963863-17070633	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv892656	chr9:17008137-17076367	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv2762801	chr9:17029570-17054625	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1021013	chr9:17045105-17072402	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1033462	chr9:17046823-17081683	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1019424	chr9:17049320-17081683	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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