Variant report

Variant	rs10962873
Chromosome Location	chr9:17110624-17110625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr9:17110532-17110668	HepG2	liver:	n/a	n/a
2	MAFF	chr9:17110596-17110752	HepG2	liver:	n/a	n/a
3	MAFK	chr9:17110470-17110785	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000237083	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1016100	0.95[ASN][1000 genomes]
rs10810718	1.00[CEU][hapmap]
rs10810719	1.00[CEU][hapmap]
rs10810724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810736	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10962836	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962843	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962844	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962852	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10962853	0.84[ASN][1000 genomes]
rs10962855	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962860	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962875	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10962885	0.84[ASN][1000 genomes]
rs10962892	0.84[ASN][1000 genomes]
rs10962896	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10962903	1.00[JPT][hapmap]
rs12004921	0.84[ASN][1000 genomes]
rs17754109	0.84[ASN][1000 genomes]
rs17754240	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17827163	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2210540	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2632540	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263562	0.91[EUR][1000 genomes]
rs263565	0.91[EUR][1000 genomes]
rs263566	0.91[EUR][1000 genomes]
rs263619	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs263620	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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