Variant report

Variant	rs10810736
Chromosome Location	chr9:17134061-17134062
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr9:17133794-17135869	PBDE	blood:	n/a	chr9:17134499-17134506 chr9:17134125-17134146 chr9:17134128-17134144 chr9:17134128-17134144
2	MXI1	chr9:17134028-17136249	SK-N-SH	brain:	n/a	n/a
3	E2F4	chr9:17133813-17135343	MCF10A-Er-Src	breast:	n/a	chr9:17134779-17134786 chr9:17134953-17134965 chr9:17134779-17134786 chr9:17134779-17134786 chr9:17134778-17134786 chr9:17134957-17134964 chr9:17134957-17134964 chr9:17134775-17134787 chr9:17134957-17134964 chr9:17134956-17134965 chr9:17134778-17134787

Variant related genes	Relation type
CNTLN	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1016100	0.89[ASN][1000 genomes]
rs10810724	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10962873	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs10962875	0.84[ASN][1000 genomes]
rs10962885	1.00[ASN][1000 genomes]
rs10962892	1.00[ASN][1000 genomes]
rs10962896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs10962903	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10962910	0.84[ASN][1000 genomes]
rs10963033	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10963038	1.00[CHB][hapmap]
rs11535434	0.85[ASN][1000 genomes]
rs12004921	1.00[ASN][1000 genomes]
rs12237698	0.84[ASN][1000 genomes]
rs17754109	1.00[ASN][1000 genomes]
rs17754240	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17827163	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2210540	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2383012	0.89[ASN][1000 genomes]
rs2632540	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17131200-17134400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr9:17131200-17134400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr9:17131200-17134400	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr9:17131800-17134400	Weak transcription	A549	lung
5	chr9:17132600-17134400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr9:17133600-17134600	Enhancers	Liver	Liver
7	chr9:17133800-17134200	Weak transcription	Fetal Intestine Small	intestine
8	chr9:17133800-17134600	Enhancers	Fetal Stomach	stomach
9	chr9:17134000-17134400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:17134000-17134400	Enhancers	Colon Smooth Muscle	Colon

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