Variant report

Variant	rs1016100
Chromosome Location	chr9:17120267-17120268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10810724	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10810736	0.89[ASN][1000 genomes]
rs10962855	0.84[ASN][1000 genomes]
rs10962860	0.87[ASN][1000 genomes]
rs10962873	0.95[ASN][1000 genomes]
rs10962875	0.95[ASN][1000 genomes]
rs10962885	0.89[ASN][1000 genomes]
rs10962892	0.89[ASN][1000 genomes]
rs12004921	0.89[ASN][1000 genomes]
rs17754109	0.89[ASN][1000 genomes]
rs17754240	0.89[ASN][1000 genomes]
rs17827163	0.89[ASN][1000 genomes]
rs2210540	0.89[ASN][1000 genomes]
rs2632540	0.95[ASN][1000 genomes]
rs263619	0.80[EUR][1000 genomes]
rs263620	0.80[EUR][1000 genomes]
rs381883	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs427659	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	esv3374274	chr9:17117977-17120725	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3516810	chr9:17118152-17120550	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3516811	chr9:17118152-17120550	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17119600-17121000	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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