Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1016100	0.87[ASN][1000 genomes]
rs10810709	0.82[ASN][1000 genomes]
rs10810718	1.00[CEU][hapmap]
rs10810719	1.00[CEU][hapmap]
rs10810724	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810736	1.00[JPT][hapmap]
rs10962836	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962843	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962844	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962852	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10962853	0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10962855	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10962873	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962875	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962896	1.00[JPT][hapmap]
rs10962903	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17754240	1.00[JPT][hapmap]
rs17827163	1.00[JPT][hapmap]
rs2210540	1.00[JPT][hapmap]
rs2632540	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs263562	0.98[EUR][1000 genomes]
rs263565	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs263566	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs263619	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs263620	0.92[EUR][1000 genomes]
rs405039	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892657	chr9:17008137-17223492	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17081200-17082800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:17081400-17082800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr9:17081400-17083000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr9:17081600-17082600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:17081600-17083000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:17081600-17083000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:17081600-17083000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:17081600-17083400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:17081600-17083400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:17081600-17083400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:17081800-17082200	Weak transcription	Fetal Lung	lung
12	chr9:17081800-17082800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr9:17081800-17083000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr9:17081800-17083000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr9:17081800-17083000	Enhancers	Fetal Kidney	kidney
16	chr9:17082000-17082400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search: