Variant report
| Variant | rs10810719 |
|---|---|
| Chromosome Location | chr9:17099352-17099353 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10810718 | 1.00[CEU][hapmap] |
| rs10810724 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10962836 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10962843 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10962844 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10962852 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10962853 | 0.86[AMR][1000 genomes] |
| rs10962855 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10962860 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10962873 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10962875 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2632540 | 0.95[EUR][1000 genomes] |
| rs263562 | 0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs263565 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs263566 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs263618 | 0.88[CHB][hapmap];1.00[JPT][hapmap] |
| rs263619 | 1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs263620 | 0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs381883 | 0.80[ASN][1000 genomes] |
| rs398715 | 0.87[ASN][1000 genomes] |
| rs405039 | 0.95[ASN][1000 genomes] |
| rs427659 | 0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024799 | chr9:16631890-17431827 | Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| 2 | esv2764141 | chr9:16903446-17351711 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv892657 | chr9:17008137-17223492 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv892658 | chr9:17041557-17532840 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10810719 | SLC24A2 | cis | parietal | SCAN |
| rs10810719 | HAUS6 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
