Variant report

Variant	rs2636971
Chromosome Location	chr5:118891908-118891909
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10069875	1.00[MEX][hapmap]
rs11959779	1.00[MEX][hapmap]
rs1428437	1.00[MEX][hapmap]
rs2560715	1.00[AMR][1000 genomes]
rs2560716	1.00[AMR][1000 genomes]
rs2560722	1.00[ASW][hapmap]
rs2561489	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2561490	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2561494	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2561515	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2636967	1.00[ASW][hapmap]
rs2636970	1.00[ASW][hapmap]
rs2678082	1.00[ASW][hapmap]
rs2678085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7711431	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv882776	chr5:118859546-118915408	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882777	chr5:118870452-118981480	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv965573	chr5:118891291-118904467	Weak transcription ZNF genes & repeats Enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118879200-118892200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr5:118890600-118896200	Weak transcription	Brain Angular Gyrus	brain
3	chr5:118891600-118899800	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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