Variant report
| Variant | rs7711431 |
|---|---|
| Chromosome Location | chr5:118964509-118964510 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:40)
| rs_ID | r2[population] |
|---|---|
| rs10069875 | 1.00[MEX][hapmap] |
| rs11949545 | 1.00[EUR][1000 genomes] |
| rs11951660 | 1.00[EUR][1000 genomes] |
| rs11952687 | 1.00[EUR][1000 genomes] |
| rs11955089 | 1.00[EUR][1000 genomes] |
| rs11956487 | 1.00[EUR][1000 genomes] |
| rs11959643 | 1.00[EUR][1000 genomes] |
| rs11959779 | 0.89[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12714 | 1.00[EUR][1000 genomes] |
| rs1428437 | 1.00[MEX][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2560723 | 1.00[EUR][1000 genomes] |
| rs2636971 | 1.00[MEX][hapmap] |
| rs28943594 | 1.00[EUR][1000 genomes] |
| rs35182344 | 1.00[EUR][1000 genomes] |
| rs35764784 | 1.00[EUR][1000 genomes] |
| rs3843986 | 1.00[EUR][1000 genomes] |
| rs3850203 | 1.00[EUR][1000 genomes] |
| rs3850204 | 1.00[EUR][1000 genomes] |
| rs4099736 | 1.00[EUR][1000 genomes] |
| rs57592998 | 1.00[EUR][1000 genomes] |
| rs57990091 | 1.00[EUR][1000 genomes] |
| rs58527989 | 1.00[EUR][1000 genomes] |
| rs59177585 | 1.00[EUR][1000 genomes] |
| rs60871537 | 1.00[EUR][1000 genomes] |
| rs61460721 | 1.00[EUR][1000 genomes] |
| rs73236713 | 1.00[EUR][1000 genomes] |
| rs73236767 | 1.00[EUR][1000 genomes] |
| rs73236771 | 1.00[EUR][1000 genomes] |
| rs73238798 | 1.00[EUR][1000 genomes] |
| rs73240903 | 1.00[EUR][1000 genomes] |
| rs73246514 | 1.00[EUR][1000 genomes] |
| rs73246536 | 1.00[EUR][1000 genomes] |
| rs73249960 | 1.00[EUR][1000 genomes] |
| rs73249990 | 1.00[EUR][1000 genomes] |
| rs73250002 | 1.00[EUR][1000 genomes] |
| rs73251677 | 1.00[EUR][1000 genomes] |
| rs73256182 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7708761 | 1.00[EUR][1000 genomes] |
| rs7711926 | 1.00[EUR][1000 genomes] |
| rs7723718 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427732 | chr5:118730999-119034741 | Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024455 | chr5:118770429-119487982 | Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016271 | chr5:118836891-119487982 | Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv882777 | chr5:118870452-118981480 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:118964200-118969200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr5:118964400-118966600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
