Variant report

Variant	rs11955089
Chromosome Location	chr5:118884876-118884877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11948865	1.00[EUR][1000 genomes]
rs11949545	1.00[EUR][1000 genomes]
rs11951660	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11952687	0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11956487	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11959643	1.00[EUR][1000 genomes]
rs11959779	1.00[EUR][1000 genomes]
rs12714	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1428437	1.00[EUR][1000 genomes]
rs2560723	0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28943589	1.00[AMR][1000 genomes]
rs28943594	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35164142	1.00[AMR][1000 genomes]
rs35182344	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35764784	1.00[EUR][1000 genomes]
rs3843986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3850204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4099736	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57270573	1.00[EUR][1000 genomes]
rs57592998	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57990091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58527989	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59177585	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59940947	1.00[EUR][1000 genomes]
rs60069733	1.00[EUR][1000 genomes]
rs60684792	1.00[EUR][1000 genomes]
rs60871537	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61460721	1.00[EUR][1000 genomes]
rs61645108	1.00[EUR][1000 genomes]
rs68126620	0.82[AFR][1000 genomes]
rs72547236	1.00[AMR][1000 genomes]
rs73236713	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73236767	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73236771	1.00[EUR][1000 genomes]
rs73238798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73240903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73243205	1.00[EUR][1000 genomes]
rs73246514	1.00[EUR][1000 genomes]
rs73246536	1.00[EUR][1000 genomes]
rs73249960	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73249990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73250002	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73251677	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73256182	1.00[EUR][1000 genomes]
rs7708761	0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7711431	1.00[EUR][1000 genomes]
rs7711926	1.00[EUR][1000 genomes]
rs7723718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv882776	chr5:118859546-118915408	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv882777	chr5:118870452-118981480	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118874800-118890200	Weak transcription	Fetal Heart	heart
2	chr5:118878800-118885600	Weak transcription	Fetal Stomach	stomach
3	chr5:118878800-118886800	Weak transcription	Aorta	Aorta
4	chr5:118878800-118888600	Weak transcription	Ovary	ovary
5	chr5:118879000-118885200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:118879000-118885200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr5:118879000-118891200	Weak transcription	Pancreas	Pancrea
8	chr5:118879200-118887600	Weak transcription	Adipose Nuclei	Adipose
9	chr5:118879200-118892200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:118881400-118890000	Weak transcription	Brain Angular Gyrus	brain

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