Variant report

Variant	rs57270573
Chromosome Location	chr5:118770733-118770734
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:118753173..118755307-chr5:118768998..118771173,2	MCF-7	breast:
2	chr5:118747505..118748328-chr5:118770657..118771776,5	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10067861	1.00[EUR][1000 genomes]
rs10073635	1.00[EUR][1000 genomes]
rs10478420	1.00[EUR][1000 genomes]
rs11948865	1.00[EUR][1000 genomes]
rs11949545	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11951660	1.00[EUR][1000 genomes]
rs11952687	1.00[EUR][1000 genomes]
rs11955089	1.00[EUR][1000 genomes]
rs11956487	1.00[EUR][1000 genomes]
rs11959643	1.00[EUR][1000 genomes]
rs12714	1.00[EUR][1000 genomes]
rs2560723	1.00[EUR][1000 genomes]
rs28943594	1.00[EUR][1000 genomes]
rs35182344	1.00[EUR][1000 genomes]
rs35764784	1.00[EUR][1000 genomes]
rs3843986	1.00[EUR][1000 genomes]
rs3850203	1.00[EUR][1000 genomes]
rs3850204	1.00[EUR][1000 genomes]
rs4099736	1.00[EUR][1000 genomes]
rs57592998	1.00[EUR][1000 genomes]
rs57990091	1.00[EUR][1000 genomes]
rs58527989	1.00[EUR][1000 genomes]
rs59177585	1.00[EUR][1000 genomes]
rs59940947	1.00[EUR][1000 genomes]
rs60069733	1.00[EUR][1000 genomes]
rs60684792	1.00[EUR][1000 genomes]
rs60871537	1.00[EUR][1000 genomes]
rs61460721	1.00[EUR][1000 genomes]
rs61645108	1.00[EUR][1000 genomes]
rs6868057	1.00[EUR][1000 genomes]
rs73235250	1.00[EUR][1000 genomes]
rs73235258	1.00[EUR][1000 genomes]
rs73236713	1.00[EUR][1000 genomes]
rs73236767	1.00[EUR][1000 genomes]
rs73236771	1.00[EUR][1000 genomes]
rs73237264	1.00[EUR][1000 genomes]
rs73238798	1.00[EUR][1000 genomes]
rs73240903	1.00[EUR][1000 genomes]
rs73241213	1.00[EUR][1000 genomes]
rs73241292	1.00[EUR][1000 genomes]
rs73243205	1.00[EUR][1000 genomes]
rs73246514	1.00[EUR][1000 genomes]
rs73246536	1.00[EUR][1000 genomes]
rs73249960	1.00[EUR][1000 genomes]
rs73249990	1.00[EUR][1000 genomes]
rs73250002	1.00[EUR][1000 genomes]
rs73251677	1.00[EUR][1000 genomes]
rs73791001	1.00[EUR][1000 genomes]
rs7708761	1.00[EUR][1000 genomes]
rs7723718	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030717	chr5:118709310-118836951	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv427732	chr5:118730999-119034741	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv4974	chr5:118750259-118795376	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:118763800-118773000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:118765000-118770800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:118769400-118772000	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:118769800-118774200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:118770400-118771800	Enhancers	Primary B cells from cord blood	blood
6	chr5:118770600-118771400	Enhancers	Fetal Heart	heart
7	chr5:118770600-118771600	Enhancers	GM12878-XiMat	blood

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