Variant report

Variant	rs2642183
Chromosome Location	chr1:84603487-84603488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:84587966..84589963-chr1:84603179..84604852,2	K562	blood:
2	chr1:84596861..84598405-chr1:84603464..84605048,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1016379	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs12031206	0.96[EUR][1000 genomes]
rs12035258	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12036564	0.85[CEU][hapmap]
rs2139931	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs2221360	0.81[EUR][1000 genomes]
rs2642181	0.97[EUR][1000 genomes]
rs2642182	0.84[CEU][hapmap];0.82[GIH][hapmap];0.80[TSI][hapmap];0.93[EUR][1000 genomes]
rs2642184	1.00[CEU][hapmap];0.85[GIH][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs2642185	1.00[CEU][hapmap];0.85[GIH][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs2684911	1.00[CEU][hapmap];0.85[GIH][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs2684914	1.00[CEU][hapmap];0.84[GIH][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes]
rs2684916	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2811998	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2811999	0.93[EUR][1000 genomes]
rs2812001	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2812447	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2812451	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2812452	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2812453	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72710880	0.93[EUR][1000 genomes]
rs72710887	0.81[EUR][1000 genomes]
rs72711180	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv546690	chr1:84562265-84655238	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871731	chr1:84597396-84658591	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871656	chr1:84601048-84693671	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84584000-84609600	Weak transcription	HSMM	muscle
2	chr1:84584000-84609800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:84588000-84618400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:84590600-84607400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:84596800-84609000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:84600000-84604400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:84601400-84608600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:84601400-84608800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:84601600-84607000	Weak transcription	Primary T cells from cord blood	blood

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