Variant report

Variant	rs2645211
Chromosome Location	chr10:4094234-4094235
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2251005	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs2645210	0.88[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2765665	0.83[CEU][hapmap];0.91[EUR][1000 genomes]
rs2935284	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs2986183	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs4880661	0.81[AMR][1000 genomes]
rs4881276	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4092800-4094400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr10:4092800-4094400	Enhancers	NHDF-Ad	bronchial
3	chr10:4093000-4094400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4093200-4094400	Active TSS	Stomach Smooth Muscle	stomach
5	chr10:4093200-4094400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr10:4093400-4094400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:4093400-4094400	Enhancers	Fetal Stomach	stomach
8	chr10:4093600-4094400	Active TSS	Rectal Smooth Muscle	rectum
9	chr10:4093600-4094400	Enhancers	Right Ventricle	heart
10	chr10:4093800-4094400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:4093800-4094600	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr10:4093800-4096000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:4093800-4096000	Weak transcription	Fetal Kidney	kidney
14	chr10:4094000-4094400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:4094000-4094400	Flanking Active TSS	Fetal Lung	lung
16	chr10:4094000-4094400	Enhancers	Placenta	Placenta
17	chr10:4094000-4094400	Enhancers	Gastric	stomach
18	chr10:4094000-4094400	Enhancers	Lung	lung
19	chr10:4094000-4094400	Enhancers	Pancreas	Pancrea
20	chr10:4094000-4094400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr10:4094000-4094400	Enhancers	Small Intestine	intestine
22	chr10:4094000-4094600	Enhancers	Left Ventricle	heart
23	chr10:4094000-4094600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr10:4094000-4094600	Enhancers	Spleen	Spleen
25	chr10:4094200-4094400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:4094200-4094400	Enhancers	Aorta	Aorta
27	chr10:4094200-4094400	Enhancers	Brain Hippocampus Middle	brain
28	chr10:4094200-4094400	Enhancers	Duodenum Mucosa	Duodenum
29	chr10:4094200-4094400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr10:4094200-4094400	Enhancers	NHLF	lung
31	chr10:4094200-4094400	Active TSS	Osteobl	bone
32	chr10:4094200-4094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:4094200-4094600	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr10:4094200-4094600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr10:4094200-4094600	Enhancers	Ovary	ovary
36	chr10:4094200-4094600	Enhancers	Right Atrium	heart
37	chr10:4094200-4096000	Weak transcription	Colon Smooth Muscle	Colon
38	chr10:4094200-4096200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr10:4094200-4096400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:4094200-4103400	Weak transcription	Stomach Mucosa	stomach

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