Variant report

Variant	rs4881276
Chromosome Location	chr10:4094454-4094455
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3827062..3828607-chr10:4093523..4096614,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10751954	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904174	0.93[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1325998	0.96[CEU][hapmap];0.89[GIH][hapmap];0.84[LWK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.99[EUR][1000 genomes]
rs2645211	0.81[CHB][hapmap]
rs7078122	0.92[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7904836	0.93[ASW][hapmap];0.96[CEU][hapmap];0.85[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4093800-4094600	Flanking Active TSS	Adipose Nuclei	Adipose
2	chr10:4093800-4096000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr10:4093800-4096000	Weak transcription	Fetal Kidney	kidney
4	chr10:4094000-4094600	Enhancers	Left Ventricle	heart
5	chr10:4094000-4094600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
6	chr10:4094000-4094600	Enhancers	Spleen	Spleen
7	chr10:4094200-4094600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:4094200-4094600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:4094200-4094600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:4094200-4094600	Enhancers	Ovary	ovary
11	chr10:4094200-4094600	Enhancers	Right Atrium	heart
12	chr10:4094200-4096000	Weak transcription	Colon Smooth Muscle	Colon
13	chr10:4094200-4096200	Weak transcription	Primary B cells from peripheral blood	blood
14	chr10:4094200-4096400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr10:4094200-4103400	Weak transcription	Stomach Mucosa	stomach
16	chr10:4094400-4094600	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr10:4094400-4096400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr10:4094400-4096800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:4094400-4097000	Weak transcription	Lung	lung
20	chr10:4094400-4099200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr10:4094400-4099400	Weak transcription	Pancreas	Pancrea
22	chr10:4094400-4100400	Weak transcription	Osteobl	bone
23	chr10:4094400-4100600	Weak transcription	Aorta	Aorta
24	chr10:4094400-4100600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr10:4094400-4100800	Weak transcription	Fetal Lung	lung
26	chr10:4094400-4102000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr10:4094400-4103600	Weak transcription	Gastric	stomach
28	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart

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