Variant report

Variant	rs7078122
Chromosome Location	chr10:4103418-4103419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4100357..4102296-chr10:4102463..4105433,2	K562	blood:
2	chr10:3827665..3830357-chr10:4102508..4105467,3	K562	blood:
3	chr10:3827232..3829993-chr10:4098770..4104169,5	MCF-7	breast:
4	chr10:4101159..4103691-chr10:4170864..4173275,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10751954	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10904174	0.84[CEU][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs1325998	0.87[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4881276	0.92[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7904836	0.87[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4094400-4103600	Weak transcription	Gastric	stomach
2	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart
3	chr10:4099600-4105400	Weak transcription	Pancreas	Pancrea
4	chr10:4100200-4103600	Weak transcription	Placenta	Placenta
5	chr10:4100600-4104400	Enhancers	Colon Smooth Muscle	Colon
6	chr10:4100800-4103600	Weak transcription	Colonic Mucosa	Colon
7	chr10:4100800-4104200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:4100800-4104200	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr10:4100800-4104400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:4100800-4104600	Enhancers	Primary T cells from cord blood	blood
11	chr10:4101000-4103600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:4101000-4103600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:4101000-4103600	Weak transcription	Esophagus	oesophagus
14	chr10:4101000-4103600	Weak transcription	Fetal Lung	lung
15	chr10:4101000-4103800	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr10:4101000-4110000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:4101200-4103600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:4101200-4103600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr10:4101200-4103600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:4101200-4103600	Weak transcription	HUVEC	blood vessel
21	chr10:4101200-4103600	Weak transcription	Osteobl	bone
22	chr10:4101200-4103800	Weak transcription	A549	lung
23	chr10:4101200-4103800	Weak transcription	Hela-S3	cervix
24	chr10:4101200-4104200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:4101400-4103800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr10:4101400-4104400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:4101600-4104200	Enhancers	Primary T cells fromperipheralblood	blood
28	chr10:4101600-4104200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:4101800-4103800	Weak transcription	Fetal Intestine Small	intestine
30	chr10:4101800-4104000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr10:4102000-4103600	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr10:4102000-4103800	Enhancers	Duodenum Mucosa	Duodenum
33	chr10:4102000-4104000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr10:4102000-4104000	Enhancers	Stomach Smooth Muscle	stomach
35	chr10:4102200-4103600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:4102200-4103600	Weak transcription	Lung	lung
37	chr10:4102400-4103600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:4102400-4109200	Weak transcription	Spleen	Spleen
39	chr10:4102600-4103600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr10:4102600-4103600	Weak transcription	Psoas Muscle	Psoas
41	chr10:4102600-4104200	Enhancers	Dnd41	blood
42	chr10:4102600-4109400	Weak transcription	Thymus	Thymus
43	chr10:4102800-4103600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr10:4102800-4103600	Weak transcription	Aorta	Aorta
45	chr10:4103200-4103600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:4103200-4105000	Enhancers	Muscle Satellite Cultured Cells	--
47	chr10:4103400-4103600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr10:4103400-4103600	Flanking Active TSS	NHEK	skin
49	chr10:4103400-4104200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr10:4103400-4104200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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