Variant report

Variant	rs10751954
Chromosome Location	chr10:4099233-4099234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3827043..3829153-chr10:4097911..4099652,2	K562	blood:
2	chr10:3825543..3829712-chr10:4097460..4102174,5	K562	blood:
3	chr10:3827232..3829993-chr10:4098770..4104169,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10904174	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1325998	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4881276	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078122	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7904836	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4094200-4103400	Weak transcription	Stomach Mucosa	stomach
2	chr10:4094400-4099400	Weak transcription	Pancreas	Pancrea
3	chr10:4094400-4100400	Weak transcription	Osteobl	bone
4	chr10:4094400-4100600	Weak transcription	Aorta	Aorta
5	chr10:4094400-4100600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:4094400-4100800	Weak transcription	Fetal Lung	lung
7	chr10:4094400-4102000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:4094400-4103600	Weak transcription	Gastric	stomach
9	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart
10	chr10:4094600-4099400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr10:4094600-4100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:4095200-4100600	Weak transcription	Adipose Nuclei	Adipose
13	chr10:4096800-4099600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:4096800-4100800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:4097000-4100600	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:4097000-4100600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr10:4097000-4100800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr10:4097200-4100400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr10:4097200-4100600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr10:4097400-4100600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr10:4099200-4099600	Enhancers	Ovary	ovary
22	chr10:4099200-4099600	Enhancers	Right Atrium	heart
23	chr10:4099200-4099600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:4099200-4099600	Enhancers	Spleen	Spleen
25	chr10:4099200-4100200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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