Variant report

Variant	rs2645298
Chromosome Location	chr1:119477542-119477543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1014098	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs17022901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2256171	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs2256826	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs2645286	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2645287	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645304	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645306	0.93[YRI][hapmap];0.84[AFR][1000 genomes]
rs2645307	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs2765535	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810933	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810934	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112208	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv997707	chr1:119199568-119595949	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv831181	chr1:119340175-119529347	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119429400-119490200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:119467600-119486600	Weak transcription	NHDF-Ad	bronchial
3	chr1:119467800-119488200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:119470800-119480600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:119474400-119479200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr1:119474400-119484800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:119474400-119487200	Weak transcription	Adipose Nuclei	Adipose
8	chr1:119474600-119487200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:119476000-119480600	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:119476400-119478400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr1:119476400-119478600	Weak transcription	Psoas Muscle	Psoas
12	chr1:119477000-119477600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:119477000-119478200	Enhancers	HSMM	muscle
14	chr1:119477200-119478000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:119477200-119478000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:119477200-119478200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:119477200-119478400	Enhancers	Muscle Satellite Cultured Cells	--
18	chr1:119477200-119478600	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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