Variant report

Variant	rs2799758
Chromosome Location	chr1:119508641-119508642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1014098	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17022901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2256171	0.92[YRI][hapmap];0.90[AFR][1000 genomes]
rs2256826	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs2645286	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2645287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645298	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2645306	0.93[YRI][hapmap];0.88[AFR][1000 genomes]
rs2645307	0.94[YRI][hapmap];0.90[AFR][1000 genomes]
rs2765535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799756	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2799757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810933	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2810934	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74112208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv997707	chr1:119199568-119595949	Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv831181	chr1:119340175-119529347	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119501200-119520200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:119503800-119511200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:119504200-119508800	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:119504200-119510200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:119505200-119508800	Weak transcription	Psoas Muscle	Psoas
6	chr1:119506200-119510400	Enhancers	Liver	Liver
7	chr1:119506800-119511800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr1:119506800-119513200	Weak transcription	HSMM	muscle
9	chr1:119506800-119513400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:119506800-119522400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:119507000-119508800	Weak transcription	Adipose Nuclei	Adipose
12	chr1:119507000-119511400	Weak transcription	Osteobl	bone
13	chr1:119507000-119515600	Weak transcription	NHDF-Ad	bronchial
14	chr1:119507200-119509200	Weak transcription	HSMMtube	muscle
15	chr1:119507400-119508800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:119507400-119515800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:119507600-119508800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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