Variant report

Variant	rs2649732
Chromosome Location	chr3:157350321-157350322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1353888	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1392186	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1392189	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1499788	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1499793	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1499797	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2201963	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2316165	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2316167	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2316168	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2649730	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2649731	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73876341	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73876344	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73876360	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs937501	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9813279	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157348200-157351400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:157349000-157350400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:157349800-157350400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:157349800-157351800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:157350000-157351400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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