Variant report

Variant	rs9813279
Chromosome Location	chr3:157327565-157327566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1353888	0.99[ASN][1000 genomes]
rs1392186	0.95[ASN][1000 genomes]
rs1392189	0.98[ASN][1000 genomes]
rs1499788	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1499793	0.95[ASN][1000 genomes]
rs1499797	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2201963	0.95[ASN][1000 genomes]
rs2316165	0.98[ASN][1000 genomes]
rs2316167	0.98[ASN][1000 genomes]
rs2316168	0.98[ASN][1000 genomes]
rs2649730	0.99[ASN][1000 genomes]
rs2649731	0.98[ASN][1000 genomes]
rs2649732	0.98[ASN][1000 genomes]
rs73876341	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73876344	0.99[ASN][1000 genomes]
rs73876360	0.94[ASN][1000 genomes]
rs937501	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157324600-157336400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:157324800-157327800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:157324800-157328000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:157326600-157327600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr3:157326800-157328200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:157327400-157329200	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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