Variant report

Variant	rs2656118
Chromosome Location	chr8:122257320-122257321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16894970	0.95[ASN][1000 genomes]
rs16894980	0.95[ASN][1000 genomes]
rs17206976	0.95[EUR][1000 genomes]
rs2581550	0.93[EUR][1000 genomes]
rs2656113	0.90[EUR][1000 genomes]
rs2656114	0.94[EUR][1000 genomes]
rs2656115	0.95[EUR][1000 genomes]
rs2656116	0.95[EUR][1000 genomes]
rs62528340	0.87[EUR][1000 genomes]
rs7006513	0.93[ASN][1000 genomes]
rs73707571	0.93[ASN][1000 genomes]
rs73707573	0.93[ASN][1000 genomes]
rs73707574	0.93[ASN][1000 genomes]
rs73707577	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2656118	OR5B2	trans	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122253200-122258600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:122253400-122258200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:122253400-122258800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:122253400-122264000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:122253600-122257600	Weak transcription	Osteobl	bone
6	chr8:122253600-122258400	Weak transcription	HSMMtube	muscle
7	chr8:122253600-122258400	Weak transcription	NHLF	lung
8	chr8:122253800-122257600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:122253800-122258200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:122253800-122258200	Weak transcription	NHDF-Ad	bronchial
11	chr8:122256200-122258800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr8:122256400-122257400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr8:122257000-122257400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr8:122257000-122257600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:122257200-122257600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr8:122257200-122258200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:122257200-122259000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links