Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122262470..122265054-chr8:122286078..122288810,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10102893	1.00[ASN][1000 genomes]
rs10104487	1.00[ASN][1000 genomes]
rs10505396	1.00[ASN][1000 genomes]
rs1124090	1.00[ASN][1000 genomes]
rs13258658	1.00[ASN][1000 genomes]
rs1553507	1.00[ASN][1000 genomes]
rs1553508	1.00[ASN][1000 genomes]
rs17206976	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1827655	1.00[ASN][1000 genomes]
rs2202381	1.00[ASN][1000 genomes]
rs2251503	0.82[EUR][1000 genomes]
rs2386267	1.00[ASN][1000 genomes]
rs2581548	1.00[ASN][1000 genomes]
rs2581549	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581550	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581552	1.00[ASN][1000 genomes]
rs2656110	1.00[ASN][1000 genomes]
rs2656111	1.00[ASN][1000 genomes]
rs2656114	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2656115	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2656116	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2656118	0.90[EUR][1000 genomes]
rs4242325	1.00[CHB][hapmap]
rs62526726	1.00[ASN][1000 genomes]
rs62528340	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6982766	1.00[ASN][1000 genomes]
rs6983966	1.00[ASN][1000 genomes]
rs6988416	1.00[ASN][1000 genomes]
rs6988639	1.00[ASN][1000 genomes]
rs6989776	1.00[ASN][1000 genomes]
rs905759	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122253400-122264000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:122259600-122265200	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:122261200-122264400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:122262800-122264200	Enhancers	Fetal Brain Female	brain
5	chr8:122263400-122264400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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