Variant report

Variant	rs2656110
Chromosome Location	chr8:122273788-122273789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:122272910..122273886-chr8:122600434..122601103,3	MCF-7	breast:
2	chr8:122272908..122274613-chr8:122276801..122278724,2	MCF-7	breast:
3	chr8:121963373..121964023-chr8:122272866..122273810,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10102893	1.00[ASN][1000 genomes]
rs10104487	1.00[ASN][1000 genomes]
rs10505396	1.00[ASN][1000 genomes]
rs1124090	1.00[ASN][1000 genomes]
rs13258658	1.00[ASN][1000 genomes]
rs1553507	1.00[ASN][1000 genomes]
rs1553508	1.00[ASN][1000 genomes]
rs17206976	1.00[ASN][1000 genomes]
rs1827655	1.00[ASN][1000 genomes]
rs2202381	1.00[ASN][1000 genomes]
rs2251503	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2386267	1.00[ASN][1000 genomes]
rs2581548	1.00[ASN][1000 genomes]
rs2581549	1.00[ASN][1000 genomes]
rs2581550	1.00[ASN][1000 genomes]
rs2581552	1.00[ASN][1000 genomes]
rs2656111	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2656113	1.00[ASN][1000 genomes]
rs2656114	1.00[ASN][1000 genomes]
rs2656115	1.00[ASN][1000 genomes]
rs2656116	1.00[ASN][1000 genomes]
rs4242325	1.00[CHB][hapmap]
rs62526726	1.00[ASN][1000 genomes]
rs6982766	1.00[ASN][1000 genomes]
rs6983966	1.00[ASN][1000 genomes]
rs6988416	1.00[ASN][1000 genomes]
rs6988639	1.00[ASN][1000 genomes]
rs6989776	1.00[ASN][1000 genomes]
rs905759	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2656110	FER1L6	cis	parietal	SCAN

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122271800-122275600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:122272200-122275800	Enhancers	Fetal Lung	lung
3	chr8:122272200-122276200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:122272200-122276200	Enhancers	Fetal Stomach	stomach
5	chr8:122272600-122274000	Enhancers	Rectal Smooth Muscle	rectum
6	chr8:122272800-122273800	Enhancers	HSMMtube	muscle
7	chr8:122272800-122274200	Enhancers	Fetal Kidney	kidney
8	chr8:122272800-122275400	Enhancers	Fetal Muscle Leg	muscle
9	chr8:122273000-122274000	Enhancers	Stomach Mucosa	stomach
10	chr8:122273000-122274400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:122273200-122273800	Active TSS	Brain Cingulate Gyrus	brain
12	chr8:122273200-122274600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:122273400-122273800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:122273400-122273800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:122273400-122273800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:122273400-122273800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:122273400-122273800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:122273400-122273800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:122273400-122273800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr8:122273400-122273800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:122273400-122273800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr8:122273400-122273800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr8:122273400-122273800	Flanking Active TSS	Brain Hippocampus Middle	brain
24	chr8:122273400-122273800	Enhancers	Brain Substantia Nigra	brain
25	chr8:122273400-122273800	Active TSS	Fetal Brain Male	brain
26	chr8:122273400-122273800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr8:122273400-122273800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr8:122273400-122273800	Active TSS	Stomach Smooth Muscle	stomach
29	chr8:122273400-122273800	Enhancers	HMEC	breast
30	chr8:122273400-122273800	Flanking Active TSS	Osteobl	bone
31	chr8:122273400-122274000	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr8:122273400-122274000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:122273400-122274000	Enhancers	Adipose Nuclei	Adipose
34	chr8:122273400-122274000	Enhancers	Duodenum Mucosa	Duodenum
35	chr8:122273400-122274200	Flanking Active TSS	NHDF-Ad	bronchial
36	chr8:122273400-122274400	Enhancers	NH-A	brain
37	chr8:122273400-122274600	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr8:122273400-122275200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:122273400-122275400	Enhancers	HSMM	muscle
40	chr8:122273400-122275400	Enhancers	HUVEC	blood vessel
41	chr8:122273400-122276400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:122273400-122277400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr8:122273400-122277600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr8:122273600-122273800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
45	chr8:122273600-122274000	Enhancers	Brain Anterior Caudate	brain
46	chr8:122273600-122274000	Flanking Active TSS	NHLF	lung
47	chr8:122273600-122274200	Enhancers	Cortex derived primary cultured neurospheres	brain
48	chr8:122273600-122274800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr8:122273600-122275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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