Variant report
Variant | rs6988639 |
---|---|
Chromosome Location | chr8:122250109-122250110 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10089470 | 0.86[EUR][1000 genomes] |
rs10090549 | 0.85[EUR][1000 genomes] |
rs10090684 | 0.85[EUR][1000 genomes] |
rs10100820 | 0.86[EUR][1000 genomes] |
rs10100931 | 0.86[EUR][1000 genomes] |
rs10101120 | 0.86[EUR][1000 genomes] |
rs10102893 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10103819 | 0.85[EUR][1000 genomes] |
rs10104288 | 0.86[EUR][1000 genomes] |
rs10104487 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10104658 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs10104851 | 0.86[EUR][1000 genomes] |
rs10107769 | 0.86[EUR][1000 genomes] |
rs10112656 | 0.85[EUR][1000 genomes] |
rs1021897 | 0.83[EUR][1000 genomes] |
rs1021898 | 0.83[EUR][1000 genomes] |
rs1021899 | 0.83[EUR][1000 genomes] |
rs1021900 | 0.83[EUR][1000 genomes] |
rs10505396 | 0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1124090 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11996526 | 0.83[EUR][1000 genomes] |
rs13258658 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13261111 | 0.86[EUR][1000 genomes] |
rs1504650 | 0.83[EUR][1000 genomes] |
rs1504651 | 0.83[EUR][1000 genomes] |
rs1504652 | 0.83[EUR][1000 genomes] |
rs1504653 | 0.83[EUR][1000 genomes] |
rs1504654 | 0.84[EUR][1000 genomes] |
rs1504655 | 0.84[EUR][1000 genomes] |
rs1504656 | 0.86[EUR][1000 genomes] |
rs1553507 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1553508 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17205796 | 0.83[EUR][1000 genomes] |
rs17205915 | 0.83[EUR][1000 genomes] |
rs17206976 | 1.00[ASN][1000 genomes] |
rs17265202 | 0.82[EUR][1000 genomes] |
rs17265314 | 0.83[EUR][1000 genomes] |
rs1827655 | 1.00[ASN][1000 genomes] |
rs1847545 | 0.86[EUR][1000 genomes] |
rs2134931 | 0.84[EUR][1000 genomes] |
rs2174348 | 0.83[EUR][1000 genomes] |
rs2174349 | 0.83[EUR][1000 genomes] |
rs2202381 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2386064 | 0.86[EUR][1000 genomes] |
rs2386065 | 0.86[EUR][1000 genomes] |
rs2386267 | 1.00[ASN][1000 genomes] |
rs2581548 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2581549 | 1.00[ASN][1000 genomes] |
rs2581550 | 1.00[ASN][1000 genomes] |
rs2581552 | 1.00[ASN][1000 genomes] |
rs2656110 | 1.00[ASN][1000 genomes] |
rs2656111 | 1.00[ASN][1000 genomes] |
rs2656113 | 1.00[ASN][1000 genomes] |
rs2656114 | 1.00[ASN][1000 genomes] |
rs2656115 | 1.00[ASN][1000 genomes] |
rs2656116 | 1.00[ASN][1000 genomes] |
rs34698310 | 0.82[EUR][1000 genomes] |
rs35806375 | 0.81[EUR][1000 genomes] |
rs4242325 | 1.00[CHB][hapmap] |
rs4870764 | 0.86[EUR][1000 genomes] |
rs62526726 | 1.00[ASN][1000 genomes] |
rs6982766 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6983966 | 1.00[ASN][1000 genomes] |
rs6988416 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6989776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7815430 | 0.97[EUR][1000 genomes] |
rs7821650 | 0.82[EUR][1000 genomes] |
rs905759 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv891424 | chr8:121873345-122393258 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv1844734 | chr8:121928250-122283585 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | esv3330574 | chr8:122039099-122386130 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv891426 | chr8:122078334-122393258 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr8:122246800-122250600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
2 | chr8:122246800-122250800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
3 | chr8:122247000-122250400 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
4 | chr8:122247400-122250600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
5 | chr8:122247400-122252400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
6 | chr8:122249600-122250200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
7 | chr8:122250000-122253800 | Enhancers | NHDF-Ad | bronchial |