Variant report
| Variant | rs2656111 |
|---|---|
| Chromosome Location | chr8:122269548-122269549 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:122248020..122250824-chr8:122267512..122270459,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10102893 | 1.00[ASN][1000 genomes] |
| rs10104487 | 1.00[ASN][1000 genomes] |
| rs10505396 | 1.00[ASN][1000 genomes] |
| rs1124090 | 1.00[ASN][1000 genomes] |
| rs13258658 | 1.00[ASN][1000 genomes] |
| rs1553507 | 1.00[ASN][1000 genomes] |
| rs1553508 | 1.00[ASN][1000 genomes] |
| rs17206976 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1827655 | 1.00[ASN][1000 genomes] |
| rs2202381 | 1.00[ASN][1000 genomes] |
| rs2251503 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2386267 | 1.00[ASN][1000 genomes] |
| rs2581548 | 1.00[ASN][1000 genomes] |
| rs2581549 | 1.00[ASN][1000 genomes] |
| rs2581550 | 1.00[ASN][1000 genomes] |
| rs2581552 | 1.00[ASN][1000 genomes] |
| rs2656110 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2656113 | 1.00[ASN][1000 genomes] |
| rs2656114 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2656115 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2656116 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62526726 | 1.00[ASN][1000 genomes] |
| rs6982766 | 1.00[ASN][1000 genomes] |
| rs6983966 | 1.00[ASN][1000 genomes] |
| rs6988416 | 1.00[ASN][1000 genomes] |
| rs6988639 | 1.00[ASN][1000 genomes] |
| rs6989776 | 1.00[ASN][1000 genomes] |
| rs905759 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891424 | chr8:121873345-122393258 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv1844734 | chr8:121928250-122283585 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv3330574 | chr8:122039099-122386130 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv891426 | chr8:122078334-122393258 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:122266000-122272200 | Weak transcription | Fetal Stomach | stomach |
| 2 | chr8:122266600-122272400 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
