Variant report

Variant	rs1827655
Chromosome Location	chr8:122187435-122187436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:122185637..122188529-chr8:122188929..122190914,2	K562	blood:
2	chr8:122001411..122003194-chr8:122185252..122188159,2	MCF-7	breast:
3	chr8:121997176..121997957-chr8:122187230..122188110,2	MCF-7	breast:
4	chr8:122176632..122180030-chr8:122186675..122188884,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10102893	1.00[ASN][1000 genomes]
rs10104487	1.00[ASN][1000 genomes]
rs10108717	0.88[EUR][1000 genomes]
rs10111630	0.89[EUR][1000 genomes]
rs10505396	1.00[ASN][1000 genomes]
rs10956006	0.90[EUR][1000 genomes]
rs1124090	1.00[ASN][1000 genomes]
rs13258658	1.00[ASN][1000 genomes]
rs1433393	0.82[EUR][1000 genomes]
rs1504658	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs1553507	1.00[ASN][1000 genomes]
rs1553508	1.00[ASN][1000 genomes]
rs1560771	0.88[EUR][1000 genomes]
rs1604898	0.87[EUR][1000 genomes]
rs17206976	1.00[ASN][1000 genomes]
rs17262197	0.87[EUR][1000 genomes]
rs2202381	1.00[ASN][1000 genomes]
rs2386267	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581548	1.00[ASN][1000 genomes]
rs2581549	1.00[ASN][1000 genomes]
rs2581550	1.00[ASN][1000 genomes]
rs2581552	1.00[ASN][1000 genomes]
rs2656110	1.00[ASN][1000 genomes]
rs2656111	1.00[ASN][1000 genomes]
rs2656113	1.00[ASN][1000 genomes]
rs2656114	1.00[ASN][1000 genomes]
rs2656115	1.00[ASN][1000 genomes]
rs2656116	1.00[ASN][1000 genomes]
rs4242325	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4304334	0.87[EUR][1000 genomes]
rs4871168	0.90[EUR][1000 genomes]
rs4871170	0.83[EUR][1000 genomes]
rs4871171	0.83[EUR][1000 genomes]
rs6469992	0.89[EUR][1000 genomes]
rs6982766	1.00[ASN][1000 genomes]
rs6983966	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988416	1.00[ASN][1000 genomes]
rs6988639	1.00[ASN][1000 genomes]
rs6989776	1.00[ASN][1000 genomes]
rs7844326	0.82[EUR][1000 genomes]
rs905759	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122185600-122188400	Weak transcription	Fetal Muscle Leg	muscle
2	chr8:122185600-122190400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:122185800-122190400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:122186800-122187600	Weak transcription	HSMM	muscle

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